Insight Journal

The Insight Journal is an Open Access on-line publication covering the domain of medical image processing and visualization.

The unique characteristics of the Insight Journal include:

- Open-access to articles, data, code, and reviews
- Open peer-review that invites discussion between reviewers and authors
- Emphasis on reproducible science via automated code compilation and testing
- Support for continuous revision of articles, code, and reviews

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ND morphological contour interpolation
Published in The Insight Journal

Zukić D., Vicory J., McCormick M., Wisse L., Gerig G., Yushkevich P., Aylward S.

This document describes a new class, itk::MorphologicalContourInterpolator, which implements a method proposed by Albu et al. in 2008. Interpolation is done by first determining correspondence between shapes on adjacent segmented slices by detecting overlaps, [...]

downloaded 3073 times, viewed 11255 times and no review.

RLEImage: run-length encoded memory compression scheme for an itk::Image
Published in The Insight Journal

Zukić D., McCormick M., Gerig G., Yushkevich P.

This document describes a new class, itk::RLEImage, which uses run-length encoding to reduce the memory needed for storage of label maps. This class is accompanied by all the iterators to make it a dropin replacement for itk::Image. By changing the image [...]

downloaded 2393 times, viewed 7738 times and no review.

A new implementation of itk::ImageToImageFilter for efficient parallelization of image processing algorithms using Intel Threading Building Blocks

A new implementation of itk::ImageToImageFilter for efficient parallelization of image processing algorithms using Intel Threading Building Blocks
Published in The Insight Journal

Jaberzadeh A., Scherrer B., Warfield S.

Modern medical imaging makes use of high performance computing to accelerate image acquisition, image reconstruction, image visualization and image analysis. Software libraries that provide implementations of key medical imaging algorithms need to efficiently [...]

downloaded 2954 times, viewed 19304 times and 1 reviews.

Isotropic and Steerable Wavelets in N Dimensions. A multiresolution analysis framework.

Isotropic and Steerable Wavelets in N Dimensions. A multiresolution analysis framework.
Published in The Insight Journal

Hernandez-Cerdan P.

This document describes the implementation of the external module ITKIsotropicWavelets, a multiresolution (MRA) analysis framework using isotropic and steerable wavelets in the frequency domain. This framework provides the backbone for state of the art [...]

downloaded 2113 times, viewed 9752 times and 1 reviews.

Performance Benchmarking the Insight Toolkit
Published in The Insight Journal

McCormick M., Kang H.J., Barre S.

This document describes a module for the Insight Toolkit (ITK) to assist in performance benchmarking and a suite of benchmarks for the toolkit. These resources provide metrics to quantify software computational performance. This is a pre-requisite to improve [...]

downloaded 2986 times, viewed 8150 times and no review.

ITK in Biomedical Research and Commercial Applications
Published in The Insight Journal

McCormick M., Aylward S., Johnson H., Lowekamp B.

The Insight Segmentation and Registration Toolkit (www.itk.org) has become a standard in academia and industry for medical image analysis. In recent years, the ITK developers' community has focused on providing programming interfaces to ITK from Python, Java, [...]

downloaded 3300 times, viewed 11858 times and no review.

Integration of the Java Image Science Toolkit with E-Science Platform
Published in The Insight Journal

Damon S., Panjwani S., Bao S., Kochunov P., Landman B.

Medical image analyses rely on diverse software packages assembled into a “pipeline”. The Java Image Science Toolkit (JIST) has served as a standalone plugin into the Medical Image Processing Analysis and Visualization (MIPAV). We addressed shortcomings [...]

downloaded 2709 times, viewed 9246 times and no review.

OpenCL accelerated GPU binary morphology image filters for ITK
Published in The Insight Journal

Bardosi Z.

Binary morphological operations are fundamental tools in image processing but the processing time scales with the number of pixels thus making them expensive operations on the CPU for larger 3D datasets that typically appear in medical imaging. Since erosion [...]

downloaded 2733 times, viewed 7550 times and no review.

Anisotropic Fast Marching in ITK
Published in The Insight Journal

Mirebeau J.

The Fast Marching algorithm is an efficient numerical method for computing the distance and shortest path between points of a domain. For that purpose, it solves a front propagation problem, which can be of interest in itself. The method has numerous [...]

downloaded 27250 times, viewed 14554 times and no review.

Probabilistic Tissue Characterization for Ultrasound Images
Published in The Insight Journal

Curiale A.H., Vegas-Sánchez-Ferrero G., Aja-Fernández S.

This document describes the derivation of the mixture models commonly used in the literature to describe the probabilistic nature of speckle: The Gaussian Mixture Model, the Rayleigh Mixture Model, the Gamma Mixture Model and the Generalized Gamma Mixture [...]

downloaded 3389 times, viewed 12374 times and no review.

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