MIDAS Journal

The MIDAS Journal is an Open Access on-line publication covering different domains from Visualization to Image processing.

The unique characteristics of the MIDAS Journal include:

-Open-access to articles and reviews
-Open peer-review that invites discussion between reviewers and authors
-Support for continuous revision of articles, code, and reviews

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ND morphological contour interpolation
Published in The Insight Journal

Zukić D., Vicory J., McCormick M., Wisse L., Gerig G., Yushkevich P., Aylward S.

This document describes a new class, itk::MorphologicalContourInterpolator, which implements a method proposed by Albu et al. in 2008. Interpolation is done by first determining correspondence between shapes on adjacent segmented slices by detecting overlaps, [...]

downloaded 2781 times, viewed 10269 times and no review.

RLEImage: run-length encoded memory compression scheme for an itk::Image
Published in The Insight Journal

Zukić D., McCormick M., Gerig G., Yushkevich P.

This document describes a new class, itk::RLEImage, which uses run-length encoding to reduce the memory needed for storage of label maps. This class is accompanied by all the iterators to make it a dropin replacement for itk::Image. By changing the image [...]

downloaded 2138 times, viewed 6974 times and no review.

Cubic and Hermite splines for VTK
Published in The MIDAS Journal

Kovacs N., Peters T., Chen E.

A cubic spline is a spline where each curve is defined by a third-order polynomial, while a Hermite spline has each polynomial specified in Hermite form, being computed using tangent information as well as the position of the points. We propose two new [...]

downloaded 1359 times, viewed 7998 times and no review.

A new implementation of itk::ImageToImageFilter for efficient parallelization of image processing algorithms using Intel Threading Building Blocks

A new implementation of itk::ImageToImageFilter for efficient parallelization of image processing algorithms using Intel Threading Building Blocks
Published in The Insight Journal

Jaberzadeh A., Scherrer B., Warfield S.

Modern medical imaging makes use of high performance computing to accelerate image acquisition, image reconstruction, image visualization and image analysis. Software libraries that provide implementations of key medical imaging algorithms need to efficiently [...]

downloaded 2650 times, viewed 18235 times and 1 reviews.

Providing values of adjacent voxel with vtkDiscreteMarchingCubes
Published in The VTK Journal

Grothausmann R.

The contribution to VTK presented in this article is an extension to vtk::vtkDiscreteMarchingCubes to also create vtk::vtkPointData scalars containing the value of the adjacent voxel. These can be used to remove regions of the marching-cubes 1 mesh depending [...]

downloaded 2094 times, viewed 5954 times and no review.

Isotropic and Steerable Wavelets in N Dimensions. A multiresolution analysis framework.

Isotropic and Steerable Wavelets in N Dimensions. A multiresolution analysis framework.
Published in The Insight Journal

Hernandez-Cerdan P.

This document describes the implementation of the external module ITKIsotropicWavelets, a multiresolution (MRA) analysis framework using isotropic and steerable wavelets in the frequency domain. This framework provides the backbone for state of the art [...]

downloaded 1782 times, viewed 8771 times and 1 reviews.

Performance Benchmarking the Insight Toolkit
Published in The Insight Journal

McCormick M., Kang H.J., Barre S.

This document describes a module for the Insight Toolkit (ITK) to assist in performance benchmarking and a suite of benchmarks for the toolkit. These resources provide metrics to quantify software computational performance. This is a pre-requisite to improve [...]

downloaded 2712 times, viewed 7494 times and no review.

Automatic Mandible Segmentation on CT Images Using Prior Anatomical Knowledge
Published in The MIDAS Journal

Aghdasi N., Li Y., Berens A., Moe K., Hannaford B.

We present a fully automatic method for segmenting mandible in CT images using anatomic landmarks and prior knowledge. The aim is to utilize spatial relationship of anatomic landmarks with image processing techniques to detect mandible robustly and [...]

downloaded 1422 times, viewed 12608 times and no review.

Automatic Segmentation of Structures in CT Head and Neck Images using a Coupled Shape Model
Published in The MIDAS Journal

Jung F., Knapp O., Wesarg S.

The common approach to do a fully automatic segmentation of multiple structures is an atlas or multi-atlas based solution. These already have proven to be suitable for the segmentation of structures in the head and neck area and provide very accurate [...]

downloaded 1329 times, viewed 11003 times and no review.

ITK in Biomedical Research and Commercial Applications
Published in The Insight Journal

McCormick M., Aylward S., Johnson H., Lowekamp B.

The Insight Segmentation and Registration Toolkit (www.itk.org) has become a standard in academia and industry for medical image analysis. In recent years, the ITK developers' community has focused on providing programming interfaces to ITK from Python, Java, [...]

downloaded 3013 times, viewed 11119 times and no review.

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